Installation

Options

There are several options to download and install PACMAN:

Using a conda environment (recommended)

We generally recommend installing PACMAN in a conda environment. To install conda, follow these instructions.

Once you have Anaconda installed, navigate in a terminal to a directory where you want to store the cloned PACMAN directory and type the following lines:

conda create -n pacman python==3.9
git clone https://github.com/sebastian-zieba/PACMAN
cd PACMAN
conda activate pacman
pip install -e .

With these steps we created a conda environment called pacman and installed PACMAN and its dependencies there.

Note

In this example, the conda environment was initialized with python v3.9.0. PACMAN was tested with python v3.7 to v3.10, so it is up to the user which version to use.

Note

pip install -e . will only install the necessary dependencies. If you also want to install the dependencies to run the tests (using pytest) or work on the docs, you have to use the [test] or [docs] arguments respectively after pip install -e .. See Test Your Installation for an example.

If you want to update your local installation with a new release, navigate to the PACMAN directory again and type:

git pull
pip install --upgrade --force-reinstall .

This will reinstall PACMAN and its dependencies.

With pip & GitHub

You can install PACMAN using pip by entering the following line into a terminal:

pip install -e git+https://github.com/sebastian-zieba/PACMAN

Directly from GitHub

1. You can also download from source on GitHub. There are two ways to do that:

On GitHub, you can either click on Code and Download ZIP followed by unpacking the distribution by opening up a terminal and typing:

unzip PACMAN-master.zip

Or clone the repository using git by typing:

git clone https://github.com/sebastian-zieba/PACMAN

To install PACMAN as a package, go into the downloaded PACMAN directory (where setup.cfg is located) and type:

pip install -e .

Using pip (PyPI)

Not implemented yet. Might be added in the future…

Test your installation

To test if your installation was successful, navigate to your cloned PACMAN directory and type:

pip install -e .[test]

The [test] argument will also install the necessary dependencies to run pytest.

You can now run pytest by typing the following line while (from inside the PACMAN directory):

pytest tests/tests_all.py -s

The optional -s flag will also output all print statements during the tests so that you can see what happens. The tests might take a few minutes (depending on your internet connection speed).

You have passed all tests if you get a message like this in the end:

=========== 12 passed, 197 warnings in 157.00s (0:02:37) ===========